The museum is housed in the katholikon of the Venetian monastery of St. Francis. During the period of the Turkish occupation it was the Muslim mosque of Yussuf Pasha, while in modern times it was used as a cinema or a storehouse for military equipment. Since 1963 it has been functioning as the Archaeological Museum of the city. Apart from the permanent exhibition, the museum houses temporary exhibitions in the frame of certain local events
25 Chalidon Str., tel. +30821 90334
It contains impressive finds from the excavations of the ancient city of Kydonia, from Idramia, Aptera, Polyrinia, Kissamos, Elyros, Irtakina, Syia, Lissos, Chania, Axos, and Lappa.

Elyros ("Έλυρος" in Greek) is an ancient city, located in southwest Crete, in Kefala Hill, near the village Rodovani and is presently unexcavated. Elyros was flourishing at least as early as the Greek Classical Period, e.g. 500 to 350 BC. In the Classical Period Elyros was the most important ancient city in southwestern Crete, having about 16,000 inhabitants. It was an industrial and commercial city with large weapons production. Syia and Lissos were its harbours. Apollo, Phylakides and Philandros, sons of Apollo and nymph Akakallida, were worshiped there. In the third century BC Elyros was at war with Kydonia, an important center of Cretan power, located in the modern city of Chania. The citizens of Elyros sent to the Delphi Oracle, a bronze votive complex that represents a goat feeding the sons of Apollo when they were infants. It is also one of the thirty cities that signed the decree with Eumenes B’ in 183 BC.Elyros was also important during Roman times. A Roman statue, the Philosopher of Elyros was recovered here and is now in the Archaeological Museum of Chania. During Byzantine times, Elyros was the seat of an Archbishop and the remains of the bishopric church, a sixth century basilica, can still be seen in the centre of the old city. Robert Pashley was the first who identified the location of the city, near village Rodovani. Thenon studied more carefully the ruins of the city and discovered the inscription that says: “it seemed to the city of the Elyrians”.
The output of its mint consists of silver drachms from the 3rd c. BC, which depict a wild goat and a bee; in addition to their function as religious symbols, these undoubtedly hint at the stock-raising activities in the region, particularly to this kind of wild goat, which can still be found in great numbers on the island. The bee also has reference to the abundant honey-production of Crete.

Located ~2.3km west of Sougia it was the religious centre of the cities in south-west Crete and the port of Elyros. It flourished during the Hellenistic and Roman periods. In 1957-58 Asklepieion was excavated by N. Platon. The most important monuments of the site are: The Temple of Asklepios, dated to the Hellenistic and Roman periods, Part of a Roman theatre, Rock-cut and built chamber tombs.
There two byzantine chapels dedicated to Our Lady and Agios Kirikos
The beach in the small cove has coarse pebbles and clear waters.
Lissos (GR: Λισσός) nowadays is uninhabited and can be reached from Sougia only by foot (~1& 1/2 hours walk) or by boat (~20 minutes).

The Monastery of Arkádi (GR:Αρκάδι) built during the last Venetian period, it consists of a large set of fortress-like buildings. The main building included the cells, the warehouses where the agricultural products were treated and stored, the stables. In a word, it was a well-equipped little fortress where people could find refuge in times of trouble. There is an impressive church, with two naves dedicated to Saint Constantine and Saint Helen, and to Our Lord. Due to the holocaust it suffered in 1866, Arkadi has become the island's most famous monastery.

Sivritos (GR: Σίβρυτος) was an important and autonomous city of the ancient Crete. The city was built in the location that today is the village of Thronos. It was located on a hill dominating the valley of Amari. The name Sivritos is derived from the words si, that in the ancient eastern languages meant water, and the word vriti, that is of prehistoric origin and meant sweet. Therefore, Sivritos in the Minoan period meant sweet water. The derivation is also verified by the fact that near the hill where the city was located there are numerous sweet water springs.

Eleftherna (Eleutherna GR: Ελεύθερνα) is located on the foothills of Mount Psiloritis, in the heartland of Crete, 25 km. southeastern of Rethymnon. It was inhabited continuously from the Sub-Neolithic period (4th millennium BC) down to the 12th cent. AD and its rich history is now summarized by five hundred selected artifacts unearthed from houses, shrines, public buildings and tombs.

Monastiraki lies in the valley of Amari, on the natural route leading from northern Crete to the Messara plain. Excavations have brought to light a centre of the Old Palace period (1950-1700 B.C.). which was destroyed by fire following an earthquake. The large number of storerooms and the existence of two archive rooms with many clay sealings indicate a palatial character for the site. Other finds on the top of a neighbouring hill suggest there must have been a religious centre in the area, as well.

The monastery of Gonia (GR: Μονή Γωνιάς) or Panagia Odigitria, is located 1 km north of Kolimbari (along the Spatha penninsula) and 24 km from the city of Chania in a wonderful place with a magnificent view to the bay of Hania. It was built in the 17th century, in the Venetian fortress style, and it is dedicated to the Assumption of the Virgin.
The monastery replaced an older, 13th-century structure, which was located on the territory of an adjacent cemetery.

Two small dry and uninhabited islets off the bay of Messara, ~7.5 naut. miles to the west of Matala. Due to their close proximity to one another the two islands appear as one from a distance. They are also called "elephantaki" as from north they look like a baby elephant that is lying down. In mythology it is believed that the goddess Lito gave birth to the god Apollon and the goddess Artemis on these islands. In antiquity they were called Dionissioi after the god Dionissos.
During the summertime there are small cruising boats that bring tourists here from Agia Galini and Kokkinos Pyrgos. There is only a small beach with fine pebble and rich seabed at the south side of the easternmost islet.